[graph-tool] About the blocks from the minimize_nested_blockmodel_dl

Rogelio Basurto rogelio.basurto at gmail.com
Thu May 26 04:22:42 CEST 2016


I've been using graph tool for about 3 weeks now. I just ran into it while
searching for a modularity method for a bipartite network.

I am amazed by graph tool and the algorithms within. But I am having truble
with a basic question (at least I think it is).

I am reading a bipartite network from a graphml file, then I do some
filtering and finally I construct the minimize_nested_blockmodel_dl as in
the example. Then I draw it, just like in the example, and it looks great.
I manage to draw it with the node names and they are fine.

Then, I would like to check the names of the nodes in the different blocks,
by the levels they are arranged from the stochastic nested block model. But
I do not know how to do that.

I found the function get_bstack() for the NestedBlockState object, but the
index in those vertices are from 0 to N, where N is the number of vertices
per level (of the model, not from my graph, I think), then how do I
associate my original vertex index (which has its name) to those graphs
from the different levels?

In short, I want to write down (terminal or file) the vertices from the
graph (with its node names) for each level and respective block. I suppose
it can be done, because the info is in the draw, but I do not know how.

Thanks in advance! Great job with graph tool, and the stochastic block
model (which I haven't completely understood, but I will).

Tech info:
I work with graph-tool 2.16-1 under Arch Linux, with Python 3.5, if that
The bipartite network have 2230 vertices and 246764 edges .
>From the state summary:
l: 0, N: 2230, B: 174
l: 1, N: 174, B: 68
l: 2, N: 68, B: 26
l: 3, N: 26, B: 9
l: 4, N: 9, B: 3
l: 5, N: 3, B: 1

Have a great day!
*Rogelio Basurto Flores*

Laboratorio de Sistemas Complejos
*​Unidad Profesional Interdisciplinaria en Ingeniería y *
*Tecnologías  Avanzadas,*
*Instituto Politécnico Nacional,*
*Av. IPN # 2580,  Col. Laguna Ticoman,*
*​Ciudad de ​M​é​xico,  07340,  M​é​xico*
*Mobile Phone: 33 1551 3665*
*E-Mail: rogelio.basurto at gmail.com <rogelio.basurto at gmail.com>*
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