[graph-tool] projecting vertex marginals to hierarchy levels

Tiago de Paula Peixoto tiago at skewed.de
Thu Jan 16 10:46:29 CET 2020


Am 15.01.20 um 18:01 schrieb Davide Cittaro:
> Hi again, 
> I'm following the cookbook and I'm collecting vertex marginals during mcmc_equilibrate, so
> 
> pv = [None] * len(state.get_levels())
> def collect_marginals(s):
>     global pv
>     pv = [sl.collect_vertex_marginals(pv[l]) for l, sl in enumerate(s.get_levels())]
> 
> gt.mcmc_equilibrate(state, force_niter=1000, mcmc_args=dict(niter=10), wait=wait,
>     nbreaks=nbreaks, epsilon=epsilon, callback=collect_marginals
> )
> 
> After this is done, every element of pv will be, basically, a list of arrays with as many elements as many vertexs are at specific level, each with the counts for memberships.
> In fact, when I need to assign groups to the original vertexs to a blockstate at level L > 0 (say, level 2) I can use
> 
> state.project_partition(2, 0)
> 
> the vertex map will contain as many elements as the number of vertex of my graph, each labeled according to the blocks at level 2 of the hierarchy. 
> I cannot find a smart way to project the marginals I've collected, would it be sufficient to sum numbers for pv[0] following the hierarchy (that is, summing counts for all groups at level 0 which are included in the same group at level 2)? 

The group labels of the projected state will match the node index of the
original level. So you only need to look into the marginal distribution
for that level, and copy it to the base level.

-- 
Tiago de Paula Peixoto <tiago at skewed.de>


More information about the graph-tool mailing list